Phil 9.9.15

8:00 – 5:00 SR

  • No progress on Dev admin
  • Work on correlation of concepts, keywords, etc. Start with ‘horse’ and ‘rider’?  TODO
  • Work on support/dispute TODO
  • PageRank in PHP TODO
  • Add ‘show/hide unrelated‘. Also, Invisible items should not have physics calculations
  • Add ‘center on selected‘? that would move the center of rotation to be any selected item.
  • Change the CSS so that the style of the buttons is taller It looks funky in some version of FF. Done
  • Clicking on queries in the network display doesn’t cause them to show up in the query window, but CONCEPTS do. Fixed
  • Adding ‘delete network’ button, since the workspace is getting cluttered. Done
  • Ran into a difficult bug to chase down. When I was deleting the last of two items (a query and an url) the url didn’t delete. It turns out that I was using a reference to an array rather than a new array of references. So I was deleting an item from an array while I was still processing the array. Ooops.

Phil 9.8.15

8:00 – 4:00 SR

  • Off yesterday for Labor Day.
  • More dev justification
  • Google Cloud platform java – https://cloud.google.com/appengine/docs/java/. The goal of this would be to calculate overall page ranks
  • Added Save for networks. In reality, this only Creates a network that is then ‘saved live’. TODO: Need to make that more clear
  • Work on correlation of concepts, keywords, etc. Start with ‘horse’ and ‘rider’?  TODO
  • Work on support/dispute 
  • PageRank in PHP 

Phil 9.4.15

8:00 – 5:00 SR

  • Lost my earlier post for today. Odd.
  • Added removeItemAssociations, which is essentially a delete item from the network
  • Fixed a bug that caused the oldes item regardless to be placed at the origin. Now it’s the oldest item of type QUERY
  • TODO: Add the ability to make visible items and their connections based on tn_type
  • Meeting with Ronda at 3:00

Phil 9.3.15

8:00 – 3:00 SR

  • More hoops to jump through for dev machine admin.
  • Training
  • Working with Ronda to get the new servers visible on the lab’s network.
  • Add a test in the NetworkChartInfo.addNetItems() method that checks to see if an item exists in the network but not in the data provider and delete it. Done. Add the appropriate call to the PHP to delete an item and get the new dataProvider back – done
  • Fix ‘+’ sign being added to search terms – done
  • Get the image textures to work – done
  • Get rid of ‘open link here’ and replace with ‘delete’ – done
  • Tried out the app on some lower-end machines and the physics become unstable. Need to add some velocity (and force?) clamping.

Phil 9.2.15

8:00 – 5:00 SR

  • Fixed a project name for Carla
  • Submitted a ticket for admin on the dev machine
  • We can see the new server in http, but not https, which is odd. Told Ronda about that, and and had Lenny send the url to some of the labs to see if it’s visible there as well.
  • Realized that I can use a view for the within network queries, where all the text can be concatenated, and possibly any associations as well? In other words, if the search returns a keyword or concept, all URLs that associate with that keyword can be displayed based on the relevance of the association…? TODO
  • Also, strip off any additional URL cruft? – Done
  • Housekeeping
    • Clear the network – Done
    • Overload the network and make sure that new items and associations don’t get added
      • Added check for items. Need to verify that associations already check. Yup, it’s there already.
  • Adding the pulls for http(s) and queries. Ran into a stupid bug where I was setting network_id with user_id

Phil 9.1.15

8:00 – 5:00 SR

  • No news on my dev box admin.
  • Build the ‘openUrl’ query
    • Send the url to Alchemy for title, Author, text, and image. Take the responses and build the html description that the 
      <item>

<title>Obama to Call for More Icebreakers in Arctic as US Seeks Foothold - New York Times</title>

<link>http://news.google.com/news/url?sa=t&fd=R&ct2=us&usg=AFQjCNEzISdc_7dbACNLX7SfwLZaa1UXBQ&clid=c3a7d30bb8a4878e06b80cf16b898331&cid=52778940195490&ei=hJjlVfCYMcvH3gGGs57IDw&url=http://www.nytimes.com/2015/09/02/us/politics/obama-to-call-for-more-icebreakers-in-arctic-as-us-seeks-foothold.html</link>

<guid isPermaLink="false">tag:news.google.com,2005:cluster=52778940195490</guid>

<category>Top Stories</category>

<pubDate>Tue, 01 Sep 2015 11:15:00 GMT</pubDate>

<description><table border="0" cellpadding="2" cellspacing="7" style="vertical-align:top;"><tr><td width="80" align="center" valign="top"><font style="font-size:85%;font-family:arial,sans-serif"><a href="http://news.google.com/news/url?sa=t&fd=R&ct2=us&usg=AFQjCNEzISdc_7dbACNLX7SfwLZaa1UXBQ&clid=c3a7d30bb8a4878e06b80cf16b898331&cid=52778940195490&ei=hJjlVfCYMcvH3gGGs57IDw&url=http://www.nytimes.com/2015/09/02/us/politics/obama-to-call-for-more-icebreakers-in-arctic-as-us-seeks-foothold.html"><img src="//t0.gstatic.com/images?q=tbn:ANd9GcTb8poiCV7-c6L52plHslVILC4Ti7eb_asJZjOiu7lRPrMAiViJFVC7YHxXBbLyaV2YQthpDI8" alt="" border="1" width="80" height="80"><br><font size="-2">New York Times</font></a></font></div></font></td></tr></table></description>

</item>
    • Obviously, the description part is the trickiest, but it doesn’t have to be as rich in content
    • Tutorial on RSS
    • Encoding and decoding html using PHP
    • In looking at the above, I think the first thing to do is to build the template for displaying the output, then encode it and see if it can be displayed. Here’s an example of a GoogleNews item: 
      <table border="0" cellpadding="2" cellspacing="7" style="vertical-align:top;">

<tr>

<td width="80" align="center" valign="top">

<font style="font-size:85%;font-family:arial,sans-serif">

<a href="http://news.google.com/news/url?sa=t&fd=R&ct2=us&usg=AFQjCNEzISdc_7dbACNLX7SfwLZaa1UXBQ&clid=c3a7d30bb8a4878e06b80cf16b898331&cid=52778940195490&ei=hJjlVfCYMcvH3gGGs57IDw&url=http://www.nytimes.com/2015/09/02/us/politics/obama-to-call-for-more-icebreakers-in-arctic-as-us-seeks-foothold.html">

<img src="//t0.gstatic.com/images?q=tbn:ANd9GcTb8poiCV7-c6L52plHslVILC4Ti7eb_asJZjOiu7lRPrMAiViJFVC7YHxXBbLyaV2YQthpDI8" alt="" border="1" width="80" height="80">

<br>

<font size="-2">New York Times</font>

</a>

</font>

</td></tr></table>
    • Ran into problems with Imagick that seem to be legendary. Rather than dealing with it on the dev box, and since it seems to be there on the main server, I’m using this hacky workaround and just ignoring it for now. What I want is thumbnails so that the asset folder doesn’t get crushed. But that’s not critical right now.
    • Finished building the itemHtml 
      private function constructHtml(){
 $htmlStr = '<table border="0" cellpadding="2" cellspacing="7" style="vertical-align:top;" width="100%"><tr><td width="80" align="center" valign="top">';
 $htmlStr .= '<a href="'.$this->rssLink.'">';
 $htmlStr .= '<img src="assets/'.$this->rssImage.'"height="80"></a></td>';
 $htmlStr .= '<td width="80%" align="left" valign="top"><span style="font-size:85%;font-family:arial,sans-serif">';
 $htmlStr .= '<a href="'.$this->rssLink.'">'.$this->rssTitle.'</a>';
 $htmlStr .= '<p>'.$this->rssDescription.'</p>';
 $htmlStr .= '</span></td></tr></table>';
 $this->rssDescription = $htmlStr;
 }
    • Tomorrow we’ll wire it up so that http and https ‘queries’ get handled from the client

Phil 8.31.15

8:00 – 4:30 SR

  • Status report – Done
  • Timesheets! – Done
  • Get selected items showing up in the feed panel. Done! looks good. Commented out the default addition to the feed. It did make me realize that I need to add a ‘filter network’. Selections should highlight in the GUI and list in the feed.
    • By text search – searching title, description and query
    • By Date range
    • Other?
  • Got the selection working. Query-ish items go in the query box where they are combined into a single query, URL-ish items are listed in the feed section.
  • Get parsing of webpages working so so that they fit into the googleNewsFeed object. This should be just using the Alchemy object with some additional parsing.
  • Deployed to the server, and verified that the page works with Chrome, FF, Edge and IE11

Phil 8.28.15

8:00 – 5:00 SR

  • Commuting in the reverse order. Don’t forget to pick up energy drink mix too!
  • 3:00 meeting with Ronda to work on the servers
  • Adding isAssociation() and isItem() methods to the rssFeed directive. Done. Will probably add isRating() and isTouch() once they start getting used.
  • Deleting ComponentNetwork class from rssController – Done
  • Deleting pendingQueryArray and queryHistory from rSSController. The history can be pulled from the items in the DataProvider. Which works.
    • Add some test QUERY types to validate – Done – replaced the ENTITIES in tn_items. Worked with no other changes.
  • Setting items if their associated queries are clicked and setting the query if a query item in the chart is clicked. Done!
  • Deploying new version to the server.
  • And I am done for the day. Next week needs the following
    • Add items, which will (should?) return the whole data provider. Only differences (additions and deletions) should cause an effect.
    • Have selected items (only?) show up in the list.
    • Have the ‘query’ task change it’s behavior based on what’s sitting in the field. If it’s an url, open it in a new tab.If it’s text (can be multiple queries) combine all the text into a new query and run it.
    • Continue to flesh out the types.
    • Save, Save As, reload (clear and load) models. Verify! Test!

Phil 8.27.15

7:30 – 5:00 SR

    • Ranted about JavaScript’s design (evolution?) flaws here.
    • Adding items to the environment
      • Need to compare the data provider to see what’s in the model but not in the DP and delete it
      • Need to change the data format to include all the tn_types – started
      • Link the pulled-down data to the chart data. Going to try just assigning pointers first.
      • Hey! It loaded from the DB and rendered! Need to anchor the network root. Done. For the time being I’m using the lowest id_index, which will equate to the earliest entry.

loadedNetwork

      • Need to verify that all the connections are good too.
      • Attached the data object.
      • The view that produced the query results was wrong. Fixed now:

loadedNetwork

  • Up on the server and tested in all browsers. Had a heart stoppage when the tn_view_network_items didn’t get added. But it’s all good now.  For tomorrow, try adding items and modifying the network structure with only the new items.

Phil 8.26.15

8:00 – 3:00 SR

  • Can still log in and do things. No progress on the dev box.
  • Make sure that the default network is selected in the initial flyout panel logic. Done
  • Back to building the data provider object. Thought about doing it on the server side, but doing it on the client 1) allows the formatting of the data from the server to remain constant as I muck with the client and 2) I can examine each item and throw away the ones that have not changed WRT the display. At least that’s my thoughts for now.
  • Got the items done, working on the associations. Added a JSON.stringify() to build a version that I can check outside the debugger.
  • Associations are doneand it looks good in JSONLint: 
    {
    "type": "XYZ",
    "bounds": {
        "xmin": -5,
        "xmax": 5,
        "ymin": 0,
        "ymax": 5,
        "zmin": -5,
        "zmax": 5
    },
    "data3D": {
        "URL": {
            "URL_1": {
                "data": {
                    "type": "URL",
                    "idIndex": 1,
                    "guid": "my_url_guid_1",
                    "description": "my url 1",
                    "title": "url 1",
                    "link": "http://url",
                    "image": "rock-512.jpg"
                }
            },
            "URL_2": {
                "data": {
                    "type": "URL",
                    "idIndex": 2,
                    "guid": "my_url_guid_2",
                    "description": "my url 2",
                    "title": "url 2",
                    "link": "http://url",
                    "image": "rock-512.jpg"
                }
            },
            "URL_3": {
                "data": {
                    "type": "URL",
                    "idIndex": 3,
                    "guid": "my_url_guid_3",
                    "description": "my url 3",
                    "title": "url 3",
                    "link": "http://url",
                    "image": "rock-512.jpg"
                }
            },
            "URL_4": {
                "data": {
                    "type": "URL",
                    "idIndex": 4,
                    "guid": "my_url_guid_4",
                    "description": "my url 4",
                    "title": "url 4",
                    "link": "http://url",
                    "image": "rock-512.jpg"
                }
            }
        },
        "ENTITIES": {
            "ENTITIES_5": {
                "data": {
                    "type": "ENTITIES",
                    "idIndex": 5,
                    "guid": "my_entity_guid_5",
                    "description": "my entity 1",
                    "title": "entity 1",
                    "link": "no link for entity",
                    "image": "rock-512.jpg"
                }
            },
            "ENTITIES_6": {
                "data": {
                    "type": "ENTITIES",
                    "idIndex": 6,
                    "guid": "my_entity_guid_6",
                    "description": "my entity 2",
                    "title": "entity 2",
                    "link": "no link for entity",
                    "image": "rock-512.jpg"
                }
            },
            "ENTITIES_7": {
                "data": {
                    "type": "ENTITIES",
                    "idIndex": 7,
                    "guid": "my_entity_guid_7",
                    "description": "my entity 3",
                    "title": "entity 3",
                    "link": "no link for entity",
                    "image": "rock-512.jpg"
                }
            },
            "ENTITIES_8": {
                "data": {
                    "type": "ENTITIES",
                    "idIndex": 8,
                    "guid": "my_entity_guid_8",
                    "description": "my entity 4",
                    "title": "entity 4",
                    "link": "no link for entity",
                    "image": "rock-512.jpg"
                }
            }
        }
    },
    "network": {
        "edges": [
            {
                "source": "URL.URL_1",
                "target": "ENTITIES.ENTITIES_5",
                "val": 1,
                "type": "TRUSTWORTHINESS"
            },
            {
                "source": "URL.URL_1",
                "target": "ENTITIES.ENTITIES_5",
                "val": 1,
                "type": "TRUSTWORTHINESS"
            },
            {
                "source": "URL.URL_2",
                "target": "ENTITIES.ENTITIES_5",
                "val": 1,
                "type": "TRUSTWORTHINESS"
            },
            {
                "source": "URL.URL_2",
                "target": "ENTITIES.ENTITIES_5",
                "val": 1,
                "type": "TRUSTWORTHINESS"
            },
            {
                "source": "URL.URL_3",
                "target": "ENTITIES.ENTITIES_5",
                "val": 1,
                "type": "TRUSTWORTHINESS"
            },
            {
                "source": "URL.URL_3",
                "target": "ENTITIES.ENTITIES_5",
                "val": 1,
                "type": "TRUSTWORTHINESS"
            },
            {
                "source": "URL.URL_4",
                "target": "ENTITIES.ENTITIES_5",
                "val": 1,
                "type": "TRUSTWORTHINESS"
            },
            {
                "source": "URL.URL_4",
                "target": "ENTITIES.ENTITIES_5",
                "val": 1,
                "type": "TRUSTWORTHINESS"
            }
        ]
    }
}
  • Will test and try to build networks tomorrow. That will require getting all the types set up, and then some integration of the data items and the rssFeed display list.

Phil 8.25.15

8:00 – 5:00 SR

  • Zeno’s admin saga continues…. Hey, I got remote desktop running! Ok, on to getting admin on my dev machine.
  • Meeting with Ronda on Friday to work on provisioning and testing servers.
  • Realized that since putting in the responses to a query, that I need associations that are COMPUTED, EXPLICIT, and DEPRECATED. In other words, the query results in 10 URLS. But the user only selects 3 now and 2 later. Only those urls and their connections are explicit in the network. Ones that I don’t want to show I deprecate. They can still be there (and probably should be? so the different networks can be compared)
  • This means that rather than adding the results of a search, we cull. This may actually work well, since in brings a different (less is more) mindset.
  • Working on putting the database items in the network, which means making a dataprovider. I think the easiest way to not have duplications is to have the Wgl3dCharts.NetworkChartInfo class manage that?

Phil 8.24.15

8:00 – 3:00 SR

  • Still working the Zeno’s Administrator problem.
  • Had a good discussion with Lenny about Low Threshold/High Ceiling coding and also about functional vs declarative programming and how ExtJS and AngularJS relate to those concepts.
  • Adding items to the live network and then bring down and parse the data object. This means pulling out the code that loads before the DB call.
  • Added queries and associations to any query that is not “__topNews__”

Phil 8.21.15

8:00 – 4:30 SR

  • Still no admin, but we’re at the last step. I think.
  • Meeting with the GMO folks. They have an ExtJS framework (YUI-based!?) for all their user IO.
  • We will *not* be abandoning Angular: xtJsVsAngularJs
  • Long discussion with Mark and Lenny about next steps. Maybe integrate all the efforts? I made the point that what we have is an information navigation system, but the info is questionable. Wheat we need is a data/inference system
  • More housekeeping for network logging in. Cleaned up the add network code on the client and server. Everything seems to be working as it’s supposed to. Next step will be to add items to the live network and then bring down and parse the data object.
  • I also realized that the best way to show the items is to have the master list populated by sublists. So the status item would be loaded first, then the selected items, then the search results. Then the various sublists can be managed separately and the other lists won’t care.

Phil 8.20.15

8:30 – 4:30 SR

  • Working on getting admin on the servers. Then my dev box.
  • Only clear the data item list when a new query is submitted. Adding an item to the network should show up in the network. Any selected items appear at the head of the itemList, above the previous search results. This way, more than one item can be added from the same search.
  • Items are added to the network only from the response from the server. The query should also send up a list of item ids and association ids that it already has, so only new items are returned. Ok, that’s mostly done, though at this point the full network is returned.
  • Network file operations need
    • A default state (id == -1?). This is an interesting problem. Since the system needs the server and the DB to build the connections in the network, we have to have a provisional network. I think I’m going to do this by creating networks where the ‘new’ network is created as ‘provisional’. If the user exits without saving and then starts a new session, any prior provisional network is deleted.
    • Merge With – adds the current network to the selected network and then downloads the while thing
    • Load – deletes anything current
    • Save –  save as current
  • I think I have this now working by saving the network the moment that the app comes up as not archive. The id is then used until another network is loaded (then all not archive are deleted for the user anyway. If the user explicitly saves the new network, then it’s set to archive.

Phil 8.19.15

8:00 – 5:00 SR

  • Admin has been approved. Waiting for my logins to re-activate
  • Friday, 9:00-ish meeting with GAO-ish folks to talk about ingest.
  • Continue working on storing items and associations.
  • These people integrate annotations into the article, which is deeper. But in the reading of an article, this seems overwhelming
  • Bayes Server – worth getting? John G. Sandiford’s thesis.
  • Adding a UID to associations, since they need to be unique and findable. Done, and it’s for within a network.
  • Added a HOST type so that the root of the domain can be stored as an attribute as well. Of course, there was a PHP call to do this.
  • Tested creation of items and associations against this Miami Herald article.
  • Need to make sure that NLP items don’t get stored if they don’t return right.